rs6207334 SNP Detail

Summary

• ID
  rs6207334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119350328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TAGAAGAGCG
  ATCTGTCTGC CCCAATCCTG GCCTGCAGCC TGGCTGGGAG ATGNAGGCAG TTGGGTCTTA
  GCAACCAGAT ACTTCATTTA GATAATTCGA AGATCCTTTT CCTTTTCTTA CACCCCAGTT
  TGCACCAGCG CTTGACCATC ATAACCCCAG TGTCATAAAA ACAGGTTAAG ACCCCCATAT
  TGAGTTAGGG GAACCCCTAG GGCGCGTTTN TTCCTCCTAG TCCACACCCC ACTTCCCCTC
  Y
  GCCCTCCAAC TCAGTCCTCT GTACATACTG TCCGTGGTCC TAGCCGTTTG CAAATTCTGC
  CCGCAAACAA TAGCGTGAAA CCTGGTATTC GGTTCTTGAA AATAAAttaa ttatacattt
  atttatgtat gtatttatgt atttatttat ttatgtattt atttatttat ttatttattt
  atttatttat ttattGTGCA CAAGGTGAGC TGGTGGCCTG TTACCACAGC TTGATCGTGA
  AGATCAGAGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612985	WI_WGS_4_117395254	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207334					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119350328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	8 bp distal
Rimkla	ribosomal modification protein rimK-like family member A	533 bp upstream
Rr598598	regulatory region 598598	13 bp distal
Tssr43121	transcription start site region 43121	570 bp upstream
Tssr43122	transcription start site region 43122	513 bp upstream