rs6207743 SNP Detail

Summary

• ID
  rs6207743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTTAGT CTCTGCCTGT
  CTAAAGCCCA GGCTGACTCT CTCTACTCTA CTTCACTAGT GTTGGTATTA GGTACAGGCC
  ACCATGCCGG GCTCTCAGCA TCAGGACTAT CAAACTGATA CTTGAGGGTG TTTACCACTC
  TTGTGAACAA GATTGAAACC AGCAGTGGCT GCCTTAATGC TGACTGAGCT CAAGAAAGTC
  R
  CTCCAGGGAA CTGTAAAATC TCCTATCCCC AGTGACCCAC ACCCACATGA AACTGCCTTC
  TGCCCAGCAA CAGAACCTGT CTAGACTGCT CTGCCTCCAA TCCAAAGTCC CAGTTCCTTA
  GGAAGAACTG TCCAGAAAGC AGAAGCTTCG AGCAGTATCT ATACCAAGGA GCAGCCCATA
  AAATATCTCC TTCCGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8613394	WI_WGS_4_83987839	WI	MOUSE	f	SNP							A		G
ss38208259	NES09592926	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6207743					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208259	NES09592926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	540 bp proximal
Plin2	perilipin 2	within coordinates
Rr594783	regulatory region 594783	449 bp distal
Rr594784	regulatory region 594784	within coordinates
Rr594785	regulatory region 594785	681 bp proximal
Rr594786	regulatory region 594786	1596 bp proximal
Tssr1221	transcription start site region 1221	880 bp upstream
Tssr37738	transcription start site region 37738	824 bp upstream
Tssr42335	transcription start site region 42335	809 bp upstream
Tssr42336	transcription start site region 42336	626 bp upstream
Tssr42337	transcription start site region 42337	81 bp downstream
Tssr42338	transcription start site region 42338	103 bp downstream
Tssr42339	transcription start site region 42339	123 bp downstream
Tssr42340	transcription start site region 42340	617 bp downstream
Tssr42341	transcription start site region 42341	661 bp downstream