rs6207975 SNP Detail

Summary

• ID
  rs6207975
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38058654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGATGAA GGAGAAAGAA
  GAGCTAGAGA AGGGCAAGAA GGAGCAGAGT AAACAGAGGG AGCCTCAGAA GAGACCTGAG
  GAGGAGGTGT TGACACTCAG AGGGACTCCT GACACAGGAG CTGCCTCGGA AGAGAAAGGA
  GACACTGCTG CAGCTCTGGA AGGTTGGTCA TGGCCACAGA AGGCTCTGGT TCATGTTTGG
  K
  CTAAGTTGTG GTCATACTAT CTTGTGACTA GTCCTCATAC ACATGTGTGT GTGTGTGGGG
  GGGGGGTCCA TCTCTTTGTG TGCAGAGGAG GCTGGAGGTC GATTCCGCTG TCACTTTCCA
  TGATCTGTTT TTAATATTAC ACCATTTCTC TACGGTCTTT CTGTATACCT CTCTTTTAAA
  TTTATGGCCT TGTTTTTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8613627	WI_WGS_1_38525761	WI	MOUSE	f	SNP							T		G
ss47238927	NES11096816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6207975					SNP	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238927	NES11096816	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38058654 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	547 bp proximal
Tssr6335	transcription start site region 6335	1711 bp downstream
Tssr6336	transcription start site region 6336	1696 bp downstream
Tssr6337	transcription start site region 6337	1513 bp downstream
Tssr6338	transcription start site region 6338	1489 bp downstream
Tssr6339	transcription start site region 6339	550 bp downstream
Tssr6340	transcription start site region 6340	524 bp downstream
Tssr6341	transcription start site region 6341	492 bp downstream
Tssr6342	transcription start site region 6342	464 bp downstream
Tssr6343	transcription start site region 6343	446 bp downstream
Tssr6344	transcription start site region 6344	410 bp downstream
Tssr6345	transcription start site region 6345	381 bp downstream
Tssr6346	transcription start site region 6346	330 bp downstream
Tssr6347	transcription start site region 6347	293 bp downstream
Tssr6348	transcription start site region 6348	153 bp downstream
Tssr6349	transcription start site region 6349	91 bp downstream