rs6208242 SNP Detail

Summary

• ID
  rs6208242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:50090651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTGCCT TCTGTTCTCT
  ACCAGGAGGA TGGAACTCTG TCTATGAGCC TGAGGGAAAA GTCTATTTTC AGAATGAAGT
  CAAATTTCAA GTGTGGAAAT ATTCATTCTG TGTTCCAAGT GCTCAGAGGC CATGGGGTAG
  GGCATTTGAA GAGCACTGGA GAAATAGCTA CAAGGAGGAG TAACTTTGAG GTCTGAATTG
  K
  GGCAGCCTCA GGAGCGAGGA AGTGTGCACA GCGTGAAAAT ATGAGTTTTG ATGTTCATAT
  ATTTCTTTCT TTTTTTTTAA AAAAACATTT TTCGTTGAAT TTTTTAATTT TTAATATTTT
  TTTATTACGT ATTTTCCTCA ATTACATTTC CAATGCTATC CCAAAAGTCC CGCATACCCT
  TCCCCCCACT TCCCTACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8613896	WI_WGS_13_49586583	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6208242					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:50090651 () rs orientation: forward

Symbol	Name	Function Class
Rr388407	regulatory region 388407	1900 bp upstream