rs6208548 SNP Detail

Summary

• ID
  rs6208548
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:36529252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGCTGCT AGGAGATCAA
  CTCTAGTTTG ATCATGTTCC TTTTTCTATT GTTTAGTGAT TACCCACTTG GTTAGGACAT
  GATTGAAGGA AAAACAAAAA AGACAAATAC CACTTAAACT AGAAAGAAAA TGTTGGAAAC
  ATAAAAAGTA AACAGTCTTT GGCTTAAAAA CCCAGTTTAA GAATAAAACC TGTGACATTT
  M
  ATTTTGCTAG AAAAACACAA GGAACTTCCT TGACTGATCT AAGACATGGA GGGAAAATGA
  AAAATTTCCA AGTGTTCTGA GATCATGCAT GGGATGCTTA GGTTGAAGTT GAGATACCAG
  TATGGTATAG GGGTCATTTT ATCCAGTATA AGATGAATAA TGGAAGAGTG AGCACATAGA
  TTGATAAACA GTGCTATTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8614202	WI_WGS_2_37067794	WI	MOUSE	f	SNP							C		A
ss37389552	NES08747454	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		A		C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6208548					SNP	C	C	C	C	C	C	C	A	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37389552	NES08747454	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:36529252 () rs orientation: forward

Symbol	Name	Function Class
Or1j16	olfactory receptor family 1 subfamily J member 16	801 bp upstream