rs6208972 SNP Detail

Summary

• ID
  rs6208972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:36529280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCATGTT CCTTTTTCTA
  TTGTTTAGTG ATTACCCACT TGGTTAGGAC ATGATTGAAG GAAAAACAAA AAAGACAAAT
  ACCACTTAAA CTAGAAAGAA AATGTTGGAA ACATAAAAAG TAAACAGTCT TTGGCTTAAA
  AACCCAGTTT AAGAATAAAA CCTGTGACAT TTCATTTTGC TAGAAAAACA CAAGGAACTT
  Y
  CTTGACTGAT CTAAGACATG GAGGGAAAAT GAAAAATTTC CAAGTGTTCT GAGATCATGC
  ATGGGATGCT TAGGTTGAAG TTGAGATACC AGTATGGTAT AGGGGTCATT TTATCCAGTA
  TAAGATGAAT AATGGAAGAG TGAGCACATA GATTGATAAA CAGTGCTATT ATGGGAAGAA
  CTCAGAGCAG CTTGAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8614627	WI_WGS_2_37067822	WI	MOUSE	f	SNP							C	T
ss37389551	NES08747455	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6208972					SNP	C	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37389551	NES08747455	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:36529280 () rs orientation: forward

Symbol	Name	Function Class
Or1j16	olfactory receptor family 1 subfamily J member 16	773 bp upstream