rs6209166 SNP Detail

Summary

• ID
  rs6209166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5682142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG ACCCTTGCCA GCATGGTGCC
  R
  CTTATAATTT CAGCTTCTAT AGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8614821	WI_WGS_2_5659499	WI	MOUSE	f	SNP							A		G
ss37320841	NES08827355	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G		G		G	G	A		G	G	A	G		G
ss45349846	mCV23173876	ABI	CRAMUS_MOUSE	f	SNP		A								G
ss146274582	ENSMUSSNP638385	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
ss320209630	CHEV_2_5598377	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6209166					SNP	G	A	A	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320841	NES08827355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5682142 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	941 bp distal
Rr64168	regulatory region 64168	1869 bp proximal
Rr372713	regulatory region 372713	342 bp downstream
Tssr22416	transcription start site region 22416	1306 bp upstream
Tssr22417	transcription start site region 22417	1266 bp upstream
Tssr22418	transcription start site region 22418	362 bp upstream
Tssr22419	transcription start site region 22419	338 bp upstream
Tssr22420	transcription start site region 22420	202 bp downstream