rs6209225 SNP Detail

Summary

• ID
  rs6209225
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:50090769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCAGAATGAA
  GTCAAATTTC AAGTGTGGAA ATATTCATTC TGTGTTCCAA GTGCTCAGAG GCCATGGGGT
  AGGGCATTTG AAGAGCACTG GAGAAATAGC TACAAGGAGG AGTAACTTTG AGGTCTGAAT
  TGNGGCAGCC TCAGGAGCGA GGAAGTGTGC ACAGCGTGAA AATATGAGTT TTGANGTTCA
  TATATTTCTT TCTTTTTTTT TAAAAAAACA TTTTTCGTTG AAttttttaa tttttaatat
  W
  tttttattac gtattttcct caattacatt tccaatgcta tcccaaaagt cccgcatacc
  cttcccccca cttccctacc cacccattcc catttttttt ggcccttgcg ttcccctnta
  ctggggcata taaagtttgc aagtccaatg ggcctctctt ttcagtgatg gnngactagg
  ccatcttttg atacatatgc agctagagtc aagagctcca nggtactggt tagttcataa
  tgttgttcca                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8614882	WI_WGS_13_49586701	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209225					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:50090769 () rs orientation: forward

Symbol	Name	Function Class
Rr388407	regulatory region 388407	1782 bp upstream