rs6209519 SNP Detail

Summary

• ID
  rs6209519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119350718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAC TATGGGGTTG ACTTTAGCCA
  K
  TTGTGTTTCC AGCTCTTTAA AACAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8615176	WI_WGS_4_117395644	WI	MOUSE	f	SNP	T							G
ss37684240	NES09206224	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	G	T		T	T	T	G	T	G	G	T
ss45630063	mCV24267323	ABI	CRAMUS_MOUSE	f	SNP		T						G
ss147330642	ENSMUSSNP117719	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6209519					SNP	T	T	T	G	T	G	T	G	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684240	NES09206224	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119350718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	398 bp distal
Rimkla	ribosomal modification protein rimK-like family member A	923 bp upstream
Rr598598	regulatory region 598598	403 bp distal
Tssr43121	transcription start site region 43121	960 bp upstream
Tssr43122	transcription start site region 43122	903 bp upstream