rs6209540 SNP Detail

Summary

• ID
  rs6209540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:36529403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCTTTG GCTTAAAAAC
  CCAGTTTAAG AATAAAACCT GTGACATTTC ATTTTGCTAG AAAAACACAA GGAACTTCCT
  TGACTGATCT AAGACATGGA GGGAAAATGA AAAATTTCCA AGTGTTCTGA GATCATGCAT
  GGGATGCTTA GGTTGAAGTT GAGATACCAG TATGGTATAG GGGTCATTTT ATCCAGTATA
  R
  GATGAATAAT GGAAGAGTGA GCACATAGAT TGATAAACAG TGCTATTATG GGAAGAACTC
  AGAGCAGCTT GAAAACTGAT ACTGGTACTC TATATTGTTG ACACAGATGC ACACACCTAA
  TGCTCTGAAT GCCTGCATAT CCTGCTTTCG GTAGTTCTAC AGATTCTGGT ATCCCACAGA
  TCCATTGTAG CTCCATGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615197	WI_WGS_2_37067945	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209540					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:36529403 () rs orientation: forward

Symbol	Name	Function Class
Or1j16	olfactory receptor family 1 subfamily J member 16	650 bp upstream