rs6209618 SNP Detail

Summary

• ID
  rs6209618
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5682184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAATTTTAAA
  TGTTTTCCCC AAAATGAATT AATGCCTATG GCTAGGCATG ACGTCTTTAA GAGGTGAGAA
  TTCCTTGGAG GTCCCGAGAC TGCTCTCTCC TGGTTCTGCC CACCTCCTCT GAGCATCCTT
  CCCTCTCCAC TTCCTGCCAC TGCAGTGACA TCTGCCTTGA GGTGATGTGG CTAAGAGGAC
  CCTTGCCAGC ATGGTGCCNC TTATAATTTC AGCTTCTATA GCTATGAACT AAATAAATCt
  S
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtntgtg tgtgtgtgta aaatctatgt
  ctgtatattt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtctatgtgt ctgtgtgCCT
  ATCTGTGTGC TATTCAGGTA TATGCATATA TGGGGAGGTA GGTTACTCCC ATATGCATGG
  GTGTGTGGAG GCCAAAGGCT AATGTCTGGA TACTTCTTTT TTAGTCAACC ACTTCTCCGT
  CTATTTATCT                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615276	WI_WGS_2_5659541	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209618					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5682184 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	983 bp distal
Rr64168	regulatory region 64168	1827 bp proximal
Rr372713	regulatory region 372713	384 bp downstream
Tssr22416	transcription start site region 22416	1348 bp upstream
Tssr22417	transcription start site region 22417	1308 bp upstream
Tssr22418	transcription start site region 22418	404 bp upstream
Tssr22419	transcription start site region 22419	380 bp upstream
Tssr22420	transcription start site region 22420	160 bp downstream