rs6209668 SNP Detail

Summary

• ID
  rs6209668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5682220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TATGGCTAGG
  CATGACGTCT TTAAGAGGTG AGAATTCCTT GGAGGTCCCG AGACTGCTCT CTCCTGGTTC
  TGCCCACCTC CTCTGAGCAT CCTTCCCTCT CCACTTCCTG CCACTGCAGT GACATCTGCC
  TTGAGGTGAT GTGGCTAAGA GGACCCTTGC CAGCATGGTG CCNCTTATAA TTTCAGCTTC
  TATAGCTATG AACTAAATAA ATCtntgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  K
  tgtgtgtgtg tgtaaaatct atgtctgtat atttgtgtgt gtgtgtgtgt gtgtgtgtgt
  gtgtgtctat gtgtctgtgt gCCTATCTGT GTGCTATTCA GGTATATGCA TATATGGGGA
  GGTAGGTTAC TCCCATATGC ATGGGTGTGT GGAGGCCAAA GGCTAATGTC TGGATACTTC
  TTTTTTAGTC AACCACTTCT CCGTCTATTT ATCTTTTTGA GACAAGACCT CTTGCAGAAT
  CTGGCTCTCA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615328	WI_WGS_2_5659577	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209668					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5682220 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	1019 bp distal
Rr64168	regulatory region 64168	1791 bp proximal
Rr372713	regulatory region 372713	420 bp downstream
Tssr22416	transcription start site region 22416	1384 bp upstream
Tssr22417	transcription start site region 22417	1344 bp upstream
Tssr22418	transcription start site region 22418	440 bp upstream
Tssr22419	transcription start site region 22419	416 bp upstream
Tssr22420	transcription start site region 22420	124 bp downstream