rs6209785 SNP Detail

Summary

• ID
  rs6209785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76901412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTCAGG GAGGCTGGGT
  ATGTGTCTGG CCCTGCCCTG CTCTGCCCTG CTCTGCCCTG CTCTGCCCTG TGACTCCAGT
  TGCAAAATGA AGACAGACAG GACCCCACTG AGGGCTGCTG GCCTCTCTTT AGGCCACTTT
  CCAACTGGTG TCTGAACCAT CATGGACTGG GGCAGCAGAG CATCAGAGAA ACAAAGCGTC
  Y
  ACCGCTCTCT GACAGAACTG ATTCGCCCTG AGTGTGAATC CTGCCTCAGT GACTTGCCCA
  AGCTGCCTGT GCCTCAGTTT CCACATCTGT CCAGTCCAGT GGGTCCAACA AGAGCTCCCG
  CTTCTGAGGA GAAGGCAAGT TGTGTATTAG TCATATTTCA CACTAAGGTG CTGGCCCAGC
  ATTTGGGCAA GCCATTAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8615446	WI_WGS_15_77517649	WI	MOUSE	f	SNP							T		C
ss48053849	NES12082118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6209785					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053849	NES12082118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76901412 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	1314 bp downstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	1726 bp distal
Rr504919	regulatory region 504919	1465 bp proximal
Rr504920	regulatory region 504920	1693 bp proximal
Tssr131853	transcription start site region 131853	1425 bp downstream
Tssr131854	transcription start site region 131854	1374 bp downstream
Tssr131855	transcription start site region 131855	1256 bp downstream
Tssr131856	transcription start site region 131856	1176 bp downstream
Tssr131857	transcription start site region 131857	419 bp upstream
Tssr131858	transcription start site region 131858	495 bp upstream
Tssr135064	transcription start site region 135064	1134 bp upstream
Tssr135065	transcription start site region 135065	432 bp downstream