rs6209848 SNP Detail

Summary

• ID
  rs6209848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151954773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagaaaccc tgtctcaaaa acaccaaaAA
  AAAAAAAAAA AATCAGTAAA TAATCACAGG GGGGAGGAGT TTAGAATGAA ACTGCATTCA
  AATCCATGTG TTCACAATGA TATTTACATA AGCAATACAA CAGCTacctt actggtctca
  Y
  ttggaagata ggagaaaatc aactcattat tttgaacatt aattaaaata gaaggaaaga
  aaccaatcat taattatact gaaagacata tacctcaagg ttaccaaacg gtagatacat
  ttactgagag aaaaaaaatc ccagctagca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8615509	WI_WGS_1_153009086	WI	MOUSE	f	SNP	C	T
ss320062218	CHEV_1_153926152	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6209848					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151954773 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	within coordinates
Gm71151	predicted gene, 71151	1809 bp downstream
Rr420414	regulatory region 420414	1426 bp distal