rs6209861 SNP Detail

Summary

• ID
  rs6209861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:50090941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TATGAGTTTT
  GANGTTCATA TATTTCTTTC TTTTTTTTTA AAAAAACATT TTTCGTTGAA TTTTTTAAtt
  tttaatatnt ttttattacg tattttcctc aattacattt ccaatgctat cccaaaagtc
  ccgcataccc ttccccccac ttccctaccc acccattccc attttttttg gcccttgcgt
  tcccctntac tggggcatat aaagtttgca agtccaatgg gcctctcttt tcagtgatgg
  Y
  ngactaggcc atcttttgat acatatgcag ctagagtcaa gagctccang gtactggtta
  gttcataatg ttgttccacc tatagggttg cagatccctt tagctccttg gntactttct
  ctagctcctc cattgggagc cctgtgatcc atccantagc tgactgtgag aatccacttc
  tgtgtttgct agaccccggc atagtctcac aagagacagc tatatctgag tcctttcagc
  aaaatcttgc                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615522	WI_WGS_13_49586873	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6209861					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:50090941 () rs orientation: forward

Symbol	Name	Function Class
Rr388407	regulatory region 388407	1610 bp upstream