rs6210163 SNP Detail

Summary

• ID
  rs6210163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110818207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCGGAGCGTC
  TGCACGCTAT CATACATTGT CAGAGAGGCA CGGCTGTCAG CGGCCACATG ACATGTTTTG
  CTTTTTGGTT TGTCTCCTTT CTGAGATTAG GTCTTGTTTC CCAGGGTGGC TGCAGACCTG
  ACACATGGCT GAGCATGACT TTAAATCGCT AATCCTTCCT TCCCCTCCTC TAGAGGTGTG
  TGCGGTGCTG GGGCTGAACT GTGTGGTTCC TCTGTGGTTT AACACTCTTA TCAACCGAAC
  Y
  ACATCGCTGC CACCCCNGGG AAACCACACA AGAGAGGTTC AGTGTCTCGG CTTGCTGTAC
  TCTAAGGCTG TGTCCTCCTT ACCTTGCTAA ATATGGCCAC AANTTTGAAT TTGATATGAC
  AGCTTTGGAA AGAGGCAGTG ATATAATTTC CACCAAAGGA GAGCAAACTT AATCAAAGTT
  AGCTTGATAG ATTTGCTGGT GGTAGCTGGT GTGATGGGGA TGGTGAAAAC CAGATTCAAA
  TAATGAAAGA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8615826	WI_WGS_12_105119687	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6210163					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110818207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	458 bp distal
Tssr115237	transcription start site region 115237	1471 bp downstream
Tssr115238	transcription start site region 115238	1448 bp downstream
Zfp839	zinc finger protein 839	within coordinates