rs6210561 SNP Detail

Summary

• ID
  rs6210561
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38702674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAGCAG TGGCACCAAT
  GATGGGCAGC CCGTCCTCAC CAAGCCCCTC TACTGTTCCA GGCACTCTCT TATGTGCTTT
  ATATGTAGTA ATACATTCAG CTCTTAATTC AGAGATAGAG GCCATTATCA CGTCCAGTTT
  TCAGATGAAG GACCCAGGAT GTGGAGACAT AGCAGCTTAT CCAAATCCAT CCTGCTAGAG
  W
  AGGGATTTGA ACCAGCAGGT CCAGCAAATG AGCAATGCTC ATTTGTCCTG TTTTTGAAAT
  GCAAACCAAA TAAAACTATG CATGCTACAA CTGAATACTA AGCACAGATG ATGCCCCAGA
  CCGAGGAAAT AGCAGTTGAC AGAGACAAAC CCCAAGAACA TTGAATGCAC ACGTTGCTTT
  GCTGTTATCT CACTCAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8616224	WI_WGS_1_39169185	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6210561					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38702674 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	within coordinates
Rr366875	regulatory region 366875	1375 bp upstream
Rr409724	regulatory region 409724	474 bp distal
Rr409725	regulatory region 409725	642 bp proximal
Rr409726	regulatory region 409726	1352 bp proximal
Rr409727	regulatory region 409727	1950 bp proximal
Tssr11346	transcription start site region 11346	1329 bp downstream
Tssr11347	transcription start site region 11347	1341 bp downstream
Tssr11348	transcription start site region 11348	1354 bp downstream
Tssr11349	transcription start site region 11349	1412 bp downstream
Tssr11350	transcription start site region 11350	1430 bp downstream
Tssr11351	transcription start site region 11351	1999 bp downstream