rs6210569 SNP Detail

Summary

• ID
  rs6210569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110818224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTTTTG GTTTGTCTCC
  TTTCTGAGAT TAGGTCTTGT TTCCCAGGGT GGCTGCAGAC CTGACACATG GCTGAGCATG
  ACTTTAAATC GCTAATCCTT CCTTCCCCTC CTCTAGAGGT GTGTGCGGTG CTGGGGCTGA
  ACTGTGTGGT TCCTCTGTGG TTTAACACTC TTATCAACCG AACTACATCG CTGCCACCCC
  R
  GGGAAACCAC ACAAGAGAGG TTCAGTGTCT CGGCTTGCTG TACTCTAAGG CTGTGTCCTC
  CTTACCTTGC TAAATATGGC CACAATTTTG AATTTGATAT GACAGCTTTG GAAAGAGGCA
  GTGATATAAT TTCCACCAAA GGAGAGCAAA CTTAATCAAA GTTAGCTTGA TAGATTTGCT
  GGTGGTAGCT GGTGTGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8616233	WI_WGS_12_105119704	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6210569					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110818224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	475 bp distal
Tssr115237	transcription start site region 115237	1488 bp downstream
Tssr115238	transcription start site region 115238	1465 bp downstream
Zfp839	zinc finger protein 839	within coordinates