rs6210726 SNP Detail

Summary

• ID
  rs6210726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110818310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCGCTGCCA CCCCAGGGAA ACCACACAAG AGAGGTTCAG
  TGTCTCGGCT TGCTGTACTC TAAGGCTGTG TCCTCCTTAC CTTGCTAAAT ATGGCCACAA
  Y
  TTTGAATTTG ATATGACAGC TTTGGAAAGA GGCAGTGATA TAATTTCCAC CAAAGGAGAG
  CAAACTTAAT CAAAGTTAGC TTGATAGATT TGCTGGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8616391	WI_WGS_12_105119790	WI	MOUSE	f	SNP							T		C
ss47289561	NES11400244	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		C	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6210726					SNP	T	T	T	T	T	T	T	C	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47289561	NES11400244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110818310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	561 bp distal
Rr473015	regulatory region 473015	1587 bp distal
Rr473016	regulatory region 473016	1617 bp distal
Tssr115237	transcription start site region 115237	1574 bp downstream
Tssr115238	transcription start site region 115238	1551 bp downstream
Zfp839	zinc finger protein 839	within coordinates