rs6210790 SNP Detail

Summary

• ID
  rs6210790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG AGCCGAGCTT TTGTGGGCGG
  Y
  GTTCTGTCAG CCCCTGCCTC TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8616455	WI_WGS_2_27730270	WI	MOUSE	f	SNP						T		C
ss37415230	NES08766097	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C		T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6210790					SNP	T	T	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415230	NES08766097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	206 bp distal
Rr553546	regulatory region 553546	725 bp distal
Rr553547	regulatory region 553547	935 bp distal
Rr553548	regulatory region 553548	224 bp distal
Rr553549	regulatory region 553549	540 bp proximal
Tssr23213	transcription start site region 23213	1212 bp upstream
Tssr23214	transcription start site region 23214	1184 bp upstream
Tssr23215	transcription start site region 23215	1134 bp upstream
Tssr23216	transcription start site region 23216	686 bp upstream
Vav2	vav 2 oncogene	714 bp upstream