rs6210806 SNP Detail

Summary

• ID
  rs6210806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76901563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACCATC ATGGACTGGG
  GCAGCAGAGC ATCAGAGAAA CAAAGCGTCT ACCGCTCTCT GACAGAACTG ATTCGCCCTG
  AGTGTGAATC CTGCCTCAGT GACTTGCCCA AGCTGCCTGT GCCTCAGTTT CCACATCTGT
  CCAGTCCAGT GGGTCCAACA AGAGCTCCCG CTTCTGAGGA GAAGGCAAGT TGTGTATTAG
  Y
  CATATTTCAC ACTAAGGTGC TGGCCCAGCA TTTGGGCAAG CCATTAAATT GGATGCTGTG
  TGGCTCCTCA GCACCCTCAG GGGAACAGGG CTGGGGTAGG TTATAGAGGA GAACTGGGGA
  GAAAGCTTAG TGGGGAGAAA GCAGGCCACT CGTATTGAGT GGCTAAGCTG GGATTTATAT
  CTCTGCCCTG GAGACTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8616471	WI_WGS_15_77517800	WI	MOUSE	f	SNP							T		C
ss48053853	NES12082122	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6210806					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053853	NES12082122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76901563 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	1465 bp downstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	1877 bp distal
Rr504919	regulatory region 504919	1314 bp proximal
Rr504920	regulatory region 504920	1542 bp proximal
Tssr131853	transcription start site region 131853	1576 bp downstream
Tssr131854	transcription start site region 131854	1525 bp downstream
Tssr131855	transcription start site region 131855	1407 bp downstream
Tssr131856	transcription start site region 131856	1327 bp downstream
Tssr131857	transcription start site region 131857	268 bp upstream
Tssr131858	transcription start site region 131858	344 bp upstream
Tssr135064	transcription start site region 135064	1285 bp upstream
Tssr135065	transcription start site region 135065	281 bp downstream