rs6211178 SNP Detail

Summary

• ID
  rs6211178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82695343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGATGGTG CTAAGGTACC
  TTAAAATCCA TCTTCAAGAT GAAGCAGCTC ATGTTCTTCA GGAGGCGACA CTTGCAGAGA
  CTGTGTTTCA TTGCATGAAA CATGGCTCAG AGGAGGTAGC TAGGCCTCAG GCCTATGTCA
  AGTAAGTTCT CTGTCATTCC AACCTGATGA GGGTTAATAT CTTCTTTAAA TCTCACGACA
  Y
  GTGGATGTTT ATCACTAAGA ACGGTTTGTG AAGAGGGTAG CTCAGTAGAA AGAGCTGTCG
  CCTGGCATTT GGGTTCTATC TTCACAACCA CAAAACAATA AGCTTCTTGA TGTTCAGCAG
  GTAGATAGAG CGCTGGGTTT CGTTCTGATG TCCCCAACAT ACCCTGTGGC CTGAACCTGA
  GAAGGTTCCC TTTGTATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8616844	WI_WGS_15_83600295	WI	MOUSE	f	SNP							T		C
ss48079681	NES12086239	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6211178					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079681	NES12086239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82695343 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	276 bp distal
Tcf20	transcription factor 20	within coordinates