rs6211355 SNP Detail

Summary

• ID
  rs6211355
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42297704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCTGCA AAGATGGAAA
  CATAGCAGGG TGGATTGCAA GTTTGGATAG GGGAGGTTTG CTGGGCCACG GGGTAACTCC
  TCAGCCCCTG GCAAGGTACC ATGTAACAGT TTTGGTGGGG GACACACAGA CGGGTTGCTG
  CTGCAGGAGA GTCTGCCCGC CCTGCAAGAC TGGTGGTTTC AGGAAAAGCA GCAGAGAAAC
  W
  GAGCATGCTT ATTTCTGTTT CCCGTGTCTG CGCGTGCCTG TGTGTGTTTC AGGACCAAGG
  TCTGCCTTTC AAAGTGACTG GCAGCTATCC TCAAGAGAGC AGAAGATAGG AGCCGTCCAC
  CAGAAGCACT AACTACCCTA TCACCTCTAC AGCTAAGCAG GACCTCTTGT AGATTTCCCT
  GTTTTCCCCA ACACTGGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617021	WI_WGS_1_42773715	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211355					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42297704 () rs orientation: forward

Symbol	Name	Function Class
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	within coordinates
Rr406833	regulatory region 406833	1 bp distal
Rr410203	regulatory region 410203	within coordinates
Rr410204	regulatory region 410204	751 bp proximal
Rr410205	regulatory region 410205	1272 bp proximal
Tssr6506	transcription start site region 6506	1259 bp upstream