rs6211361 SNP Detail

Summary

• ID
  rs6211361
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGGTTCTTGG
  TAAAGAAGAA GGGAACCCCA CAAAGCCAAG TCTTCTATGA GACTGGTGTC ATGAAAGGGA
  GCTAGAAGAG AGGAAAGTGA CCAGTTTCCA NGAGCCGAGC TTTTGTGGGC GGNGTTCTGT
  CAGCCCCTGC CTCTCTCAGT TTACCTGGGC CAGGGAAGGA TGACAGATCT GTCCCCTGCA
  CCCAGGGAAG TCCCTCCCAG AAAGGCCTCT CTCTGCAGGA AGTCCCATCA CCTGCCCCAC
  M
  TAAGGAGGAA GCATGAANCC TAATCCTAGA GATCCGGCAG AGAAGCCAGG TAGAGCCNTC
  AGCCCCTCNA CTTCACCTCT GAATAGCTTC AGGGGAAGGA CCTCCTGCGG ACTGGGGGTT
  AAATCGTCCA AAGCACAGGG CTACAGGCAG ACCCTCCAGC ATCTCCCTAA GAGTCATTCA
  ACACCCTGCA CCAAAGGGAG GAAAAAGAAA GAAGGAAAGA AAGGAGATTG CAAAGCTGAA
  AGCAAAGCAC                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617027	WI_WGS_2_27730398	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211361					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	334 bp distal
Rr553546	regulatory region 553546	853 bp distal
Rr553547	regulatory region 553547	1063 bp distal
Rr553548	regulatory region 553548	352 bp distal
Rr553549	regulatory region 553549	412 bp proximal
Tssr23213	transcription start site region 23213	1340 bp upstream
Tssr23214	transcription start site region 23214	1312 bp upstream
Tssr23215	transcription start site region 23215	1262 bp upstream
Tssr23216	transcription start site region 23216	814 bp upstream
Vav2	vav 2 oncogene	842 bp upstream