rs6211441 SNP Detail

Summary

• ID
  rs6211441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76901726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCGCTT CTGAGGAGAA
  GGCAAGTTGT GTATTAGTCA TATTTCACAC TAAGGTGCTG GCCCAGCATT TGGGCAAGCC
  ATTAAATTGG ATGCTGTGTG GCTCCTCAGC ACCCTCAGGG GAACAGGGCT GGGGTAGGTT
  ATAGAGGAGA ACTGGGGAGA AAGCTTAGTG GGGAGAAAGC AGGCCACTCG TATTGAGTGG
  Y
  TAAGCTGGGA TTTATATCTC TGCCCTGGAG ACTTGCTGTG GCCGCCTACC TCCAGGTACT
  TGACCGGGAT CTTGTGCTTG GTGGCGTGTG ATTGGGCTAG AGGCTGGATC TCGGCAGCAT
  GTTGTCCCTT CTTCTTCAGG ATGGTACCCA GGGCTGTGAG CACGGTGCAA CCATGCTTCT
  TCAGGTCCTC TGAGCCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8617107	WI_WGS_15_77517963	WI	MOUSE	f	SNP							C		T
ss48053855	NES12082124	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6211441					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48053855	NES12082124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76901726 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	1628 bp downstream
Mb	myoglobin	Intron
Rr504919	regulatory region 504919	1151 bp proximal
Rr504920	regulatory region 504920	1379 bp proximal
Tssr131853	transcription start site region 131853	1739 bp downstream
Tssr131854	transcription start site region 131854	1688 bp downstream
Tssr131855	transcription start site region 131855	1570 bp downstream
Tssr131856	transcription start site region 131856	1490 bp downstream
Tssr131857	transcription start site region 131857	105 bp upstream
Tssr131858	transcription start site region 131858	181 bp upstream
Tssr135064	transcription start site region 135064	1448 bp upstream
Tssr135065	transcription start site region 135065	118 bp downstream