rs6211818 SNP Detail

Summary

• ID
  rs6211818
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTGTGG GCGGTGTTCT
  GTCAGCCCCT GCCTCTCTCA GTTTACCTGG GCCAGGGAAG GATGACAGAT CTGTCCCCTG
  CACCCAGGGA AGTCCCTCCC AGAAAGGCCT CTCTCTGCAG GAAGTCCCAT CACCTGCCCC
  ACCTAAGGAG GAAGCATGAA CCCTAATCCT AGAGATCCGG CAGAGAAGCC AGGTAGAGCC
  W
  TCAGCCCCTC TACTTCACCT CTGAATAGCT TCAGGGGAAG GACCTCCTGC GGACTGGGGG
  TTAAATCGTC CAAAGCACAG GGCTACAGGC AGACCCTCCA GCATCTCCCT AAGAGTCATT
  CAACACCCTG CACCAAAGGG AGGAAAAAGA AAGAAGGAAA GAAAGGAGAT TGCAAAGCTG
  AAAGCAAAGC ACCCTGCTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617484	WI_WGS_2_27730456	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211818					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	392 bp distal
Rr553546	regulatory region 553546	911 bp distal
Rr553547	regulatory region 553547	1121 bp distal
Rr553548	regulatory region 553548	410 bp distal
Rr553549	regulatory region 553549	354 bp proximal
Tssr23213	transcription start site region 23213	1398 bp upstream
Tssr23214	transcription start site region 23214	1370 bp upstream
Tssr23215	transcription start site region 23215	1320 bp upstream
Tssr23216	transcription start site region 23216	872 bp upstream
Vav2	vav 2 oncogene	900 bp upstream