rs6211836 SNP Detail

Summary

• ID
  rs6211836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGTTCTG TCAGCCCCTG
  CCTCTCTCAG TTTACCTGGG CCAGGGAAGG ATGACAGATC TGTCCCCTGC ACCCAGGGAA
  GTCCCTCCCA GAAAGGCCTC TCTCTGCAGG AAGTCCCATC ACCTGCCCCA CCTAAGGAGG
  AAGCATGAAC CCTAATCCTA GAGATCCGGC AGAGAAGCCA GGTAGAGCCT TCAGCCCCTC
  Y
  ACTTCACCTC TGAATAGCTT CAGGGGAAGG ACCTCCTGCG GACTGGGGGT TAAATCGTCC
  AAAGCACAGG GCTACAGGCA GACCCTCCAG CATCTCCCTA AGAGTCATTC AACACCCTGC
  ACCAAAGGGA GGAAAAAGAA AGAAGGAAAG AAAGGAGATT GCAAAGCTGA AAGCAAAGCA
  CCCTGCTAAA TGCTGCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617502	WI_WGS_2_27730467	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211836					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	403 bp distal
Rr553546	regulatory region 553546	922 bp distal
Rr553547	regulatory region 553547	1132 bp distal
Rr553548	regulatory region 553548	421 bp distal
Rr553549	regulatory region 553549	343 bp proximal
Tssr23213	transcription start site region 23213	1409 bp upstream
Tssr23214	transcription start site region 23214	1381 bp upstream
Tssr23215	transcription start site region 23215	1331 bp upstream
Tssr23216	transcription start site region 23216	883 bp upstream
Vav2	vav 2 oncogene	911 bp upstream