rs6211980 SNP Detail

Summary

• ID
  rs6211980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42297875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTTTCA GGAAAAGCAG
  CAGAGAAACT GAGCATGCTT ATTTCTGTTT CCCGTGTCTG CGCGTGCCTG TGTGTGTTTC
  AGGACCAAGG TCTGCCTTTC AAAGTGACTG GCAGCTATCC TCAAGAGAGC AGAAGATAGG
  AGCCGTCCAC CAGAAGCACT AACTACCCTA TCACCTCTAC AGCTAAGCAG GACCTCTTGT
  R
  GATTTCCCTG TTTTCCCCAA CACTGGCTTT GCCACTAGAA AAGGGAGAGG TAGTCTACGT
  TATTTGCTTA TCATAACGGA TTTCTTATCA TTGTTTGAGG TTGCTCCCAA AGGAGTGAGG
  GCTTCTTGGG TTTCTTTTAG CACTCGGGTT CTGATTGCCC TGATGTCTGC TGGTAACACT
  GGACTCAAAC CCTGTTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617646	WI_WGS_1_42773886	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6211980					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42297875 () rs orientation: forward

Symbol	Name	Function Class
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	within coordinates
Rr406833	regulatory region 406833	172 bp distal
Rr410203	regulatory region 410203	within coordinates
Rr410204	regulatory region 410204	580 bp proximal
Rr410205	regulatory region 410205	1101 bp proximal
Tssr6506	transcription start site region 6506	1088 bp upstream