rs6212088 SNP Detail

Summary

• ID
  rs6212088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:86002306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TAGATGGATA
  AGAATACCAC AAAGAGAGGC ATCTTCAGCT CCTCGCGATC TGTGAGGCCC ACAAGAATGA
  ACTCTGTCAN CTGGGTGCAG CTTATCTGAG CCATGAATAT TCATGAGATC TATGCAGAAA
  TCAGTAGAAA AGATCATAAT CAACATTTTG ACAAGAACAT TTATATTAAT GCAGCGAAAC
  ACATTACACT GTTAACATGA AAATTATAGC CTAATTTTAA ACTGATTAGC TCAAAGCTTG
  Y
  CCATCAAATA TTTTATGCAC CAAGCCATCT CTACAAACCC TATAACGCAA TTCTTTTCTA
  TAAAATGAAT TGAAATAGAA AACTCTGAAA ATAATTTTCT ATNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617754	WI_WGS_2_87104830	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6212088					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:86002306 () rs orientation: forward

Symbol	Name	Function Class
Or8u9	olfactory receptor family 8 subfamily U member 9	147 bp upstream