rs6212160 SNP Detail

Summary

• ID
  rs6212160
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72902467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAGAGG TGAAGCCCGG
  CACAGGGGCA TGTACCTGCT TTCTCTTGTA GAATCCTTTG CGGTCACAGT TGGGCAGGTA
  CACAGCACGG GGCACCATGC GTGGGCTGGC TTTGAACTCC TGGAGGGAAG CTTCCATGTG
  TCTGCGGCAG GGGCCCTGTG AACACAGGAG GAACCCAGGT GGAAACCACT CAGCGGTGCC
  M
  TCTGATGGCT CATGTGTGGC ATCCAAAGGG ACCCGGGAGA AAAATCTACC ACCTTTATCT
  GAAGCTACTT AGGATCTTTC TTCTCCTTCA TCTGTCTGCT GCCTTGGTTG TATAGTAAGC
  CGGCACGTGG GTAGGCAGCA AGCCCTGGGT CACTTGCTCT CAGCTTTCCT ACCCTTCCAA
  GCACTGAAGA TATACAGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617826	WI_WGS_1_73551100	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6212160					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72902467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	704 bp distal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Tssr7342	transcription start site region 7342	929 bp downstream
Tssr7343	transcription start site region 7343	591 bp upstream
Tssr12192	transcription start site region 12192	1789 bp upstream
Tssr12193	transcription start site region 12193	1636 bp upstream
Tssr12194	transcription start site region 12194	1437 bp upstream
Tssr12195	transcription start site region 12195	1085 bp upstream
Tssr12196	transcription start site region 12196	1002 bp upstream
Tssr12197	transcription start site region 12197	983 bp upstream
Tssr12198	transcription start site region 12198	929 bp upstream
Tssr12199	transcription start site region 12199	80 bp upstream