rs6212199 SNP Detail

Summary

• ID
  rs6212199
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72902499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTGCTTT CTCTTGTAGA
  ATCCTTTGCG GTCACAGTTG GGCAGGTACA CAGCACGGGG CACCATGCGT GGGCTGGCTT
  TGAACTCCTG GAGGGAAGCT TCCATGTGTC TGCGGCAGGG GCCCTGTGAA CACAGGAGGA
  ACCCAGGTGG AAACCACTCA GCGGTGCCCT CTGATGGCTC ATGTGTGGCA TCCAAAGGGA
  S
  CCGGGAGAAA AATCTACCAC CTTTATCTGA AGCTACTTAG GATCTTTCTT CTCCTTCATC
  TGTCTGCTGC CTTGGTTGTA TAGTAAGCCG GCACGTGGGT AGGCAGCAAG CCCTGGGTCA
  CTTGCTCTCA GCTTTCCTAC CCTTCCAAGC ACTGAAGATA TACAGCTTAC ATTCTCTAAA
  TGTGCTAGGA TAGTGTTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8617865	WI_WGS_1_73551132	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6212199					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72902499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	736 bp distal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr22903	regulatory region 22903	502 bp proximal
Rr22904	regulatory region 22904	1102 bp proximal
Rr27597	regulatory region 27597	1904 bp proximal
Rr34509	regulatory region 34509	1299 bp distal
Tssr7342	transcription start site region 7342	961 bp downstream
Tssr7343	transcription start site region 7343	559 bp upstream
Tssr12192	transcription start site region 12192	1821 bp upstream
Tssr12193	transcription start site region 12193	1668 bp upstream
Tssr12194	transcription start site region 12194	1469 bp upstream
Tssr12195	transcription start site region 12195	1117 bp upstream
Tssr12196	transcription start site region 12196	1034 bp upstream
Tssr12197	transcription start site region 12197	1015 bp upstream
Tssr12198	transcription start site region 12198	961 bp upstream
Tssr12199	transcription start site region 12199	112 bp upstream