rs6212203 SNP Detail

Summary

• ID
  rs6212203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72902502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTTCTC TTGTAGAATC
  CTTTGCGGTC ACAGTTGGGC AGGTACACAG CACGGGGCAC CATGCGTGGG CTGGCTTTGA
  ACTCCTGGAG GGAAGCTTCC ATGTGTCTGC GGCAGGGGCC CTGTGAACAC AGGAGGAACC
  CAGGTGGAAA CCACTCAGCG GTGCCCTCTG ATGGCTCATG TGTGGCATCC AAAGGGACCC
  R
  GGAGAAAAAT CTACCACCTT TATCTGAAGC TACTTAGGAT CTTTCTTCTC CTTCATCTGT
  CTGCTGCCTT GGTTGTATAG TAAGCCGGCA CGTGGGTAGG CAGCAAGCCC TGGGTCACTT
  GCTCTCAGCT TTCCTACCCT TCCAAGCACT GAAGATATAC AGCTTACATT CTCTAAATGT
  GCTAGGATAG TGTTCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8617869	WI_WGS_1_73551135	WI	MOUSE	f	SNP							G		A
ss60750492	NES16391613	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6212203					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750492	NES16391613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72902502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	739 bp distal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr22903	regulatory region 22903	499 bp proximal
Rr22904	regulatory region 22904	1099 bp proximal
Rr27597	regulatory region 27597	1901 bp proximal
Rr34509	regulatory region 34509	1302 bp distal
Tssr7342	transcription start site region 7342	964 bp downstream
Tssr7343	transcription start site region 7343	556 bp upstream
Tssr12192	transcription start site region 12192	1824 bp upstream
Tssr12193	transcription start site region 12193	1671 bp upstream
Tssr12194	transcription start site region 12194	1472 bp upstream
Tssr12195	transcription start site region 12195	1120 bp upstream
Tssr12196	transcription start site region 12196	1037 bp upstream
Tssr12197	transcription start site region 12197	1018 bp upstream
Tssr12198	transcription start site region 12198	964 bp upstream
Tssr12199	transcription start site region 12199	115 bp upstream