rs6212446 SNP Detail

Summary

• ID
  rs6212446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42297933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCGTGCC TGTGTGTGTT
  TCAGGACCAA GGTCTGCCTT TCAAAGTGAC TGGCAGCTAT CCTCAAGAGA GCAGAAGATA
  GGAGCCGTCC ACCAGAAGCA CTAACTACCC TATCACCTCT ACAGCTAAGC AGGACCTCTT
  GTAGATTTCC CTGTTTTCCC CAACACTGGC TTTGCCACTA GAAAAGGGAG AGGTAGTCTA
  Y
  GTTATTTGCT TATCATAACG GATTTCTTAT CATTGTTTGA GGTTGCTCCC AAAGGAGTGA
  GGGCTTCTTG GGTTTCTTTT AGCACTCGGG TTCTGATTGC CCTGATGTCT GCTGGTAACA
  CTGGACTCAA ACCCTGTTGG TCCATAGCGG CCAAATCTAT GCCAGGACGC TATAGACCTT
  CCCACCTGAA TAGCCCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8618112	WI_WGS_1_42773944	WI	MOUSE	f	SNP					C	T
ss47278589	NES11102246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C			C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6212446					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278589	NES11102246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42297933 () rs orientation: forward

Symbol	Name	Function Class
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	within coordinates
Rr406833	regulatory region 406833	230 bp distal
Rr410203	regulatory region 410203	within coordinates
Rr410204	regulatory region 410204	522 bp proximal
Rr410205	regulatory region 410205	1043 bp proximal
Tssr6506	transcription start site region 6506	1030 bp upstream