rs6212678 SNP Detail

Summary

• ID
  rs6212678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132044538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATAA ATCTTAAAAA
  AAAAAAAAAA AAAAAGAAAA GCAAAAAATG AAAAGCACTC GAGAGGCAGA GGCAGAGGCA
  GGCGGATTTC TGAGTTCGAG GCCAGCCTGG TGTACAAAGT GAGCTCCAGG ACAGCCAGGG
  CTATACAGAG AAACCCTGTT TCAAAAAAGA AAAAAAAGAA AAAGAAAGAA AAGCTTTGGG
  Y
  CAAAGACAAG GTTTGGTGGA TTAAGGCATG TGCCATGATG CAAGCCTAAA GGCCCAGGTT
  TAATCCTCAG AACCCACATA AAGGTAGATG AAGAGAACAG GCTCTGTCAA GTTGTCCTCT
  GGGTTCCACA CTATGTGTTC TGTAGCACCA TCAGGCACAC ACATGGAATA ATAATAAAAC
  ATAGACAAGA GACCGAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8618344	WI_WGS_2_133203188	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6212678					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132044538 () rs orientation: forward

Symbol	Name	Function Class
Gm14051	predicted gene 14051	within coordinates
Rr373882	regulatory region 373882	829 bp downstream
Rr565420	regulatory region 565420	630 bp proximal
Rr565421	regulatory region 565421	1079 bp proximal
Rr565422	regulatory region 565422	1360 bp proximal