rs6212729 SNP Detail

Summary

• ID
  rs6212729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180211667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCCCTT CGTCCTGTCA
  TTGGGCAGGT GGCTTTGCCA TTCTCTCAGA TGAAGTGAAG ATTGAGGGTG TGATGGGTTA
  CCCAGCTCAG CGTTAGAATC AGGACTCTAA CCAGAGTAAC TCAGCTAGCG CTTGGATTAG
  TTTTATATCC AAAAACCCCC TGCCCCAAGC TCCGCATTCA CAGGTGACAC ACCACGTAGC
  R
  GCCATAAGGC CTTTGAGTTG GTTACCAGCA AGGCCCATGG CATGGTGGAG CAAGTGGGTT
  CTCGTTATAC AGACATGGGT CCCAGTCTTG GTTTCCCTTT GATGAGTTGT GTCTTCCTTG
  AGCTTCTGCT TTCTTATTAG TGAACTGGAC TGGTCTTAAT CCTATGTCAT CGATGCTTTT
  ATAGAGGGCT GTTCTGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8618395	WI_WGS_1_181766221	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6212729					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180211667 () rs orientation: forward

Symbol	Name	Function Class
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424482	regulatory region 424482	1422 bp distal
Rr424483	regulatory region 424483	341 bp proximal
Rr424484	regulatory region 424484	971 bp proximal
Rr424485	regulatory region 424485	1208 bp proximal
Tssr10460	transcription start site region 10460	1874 bp downstream
Tssr10461	transcription start site region 10461	1768 bp downstream
Tssr10462	transcription start site region 10462	1739 bp downstream
Tssr10463	transcription start site region 10463	1702 bp downstream