rs6213360 SNP Detail

Summary

• ID
  rs6213360
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180211836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTCAGCTAGC
  GCTTGGATTA GTTTTATATC CAAAAACCCC CTGCCCCAAG CTCCGCATTC ACAGGTGACA
  CACCACNTAG CNGCCATAAG GCCTTTGAGT TGGTTACCAG CAAGGCCCAT GGCATGGTGG
  AGCAAGTGGG TTCTCGTTAT ACAGACATGG GTCCCAGTCT TGGTTTCCCT TTGATGAGTT
  GTGTCTTCCT TGAGCTTCTG CTTTCTTATT AGTGAACTGG ACTGGTCTTA ATCCTATGTC
  W
  TCGATGCTTT TATAGAGGGC TGTTCTGAGC ATCAAGGGAA ATATGCATAT GCAAAAGCGC
  TTCCTCAGCC ATTTAGACGT TAAAGGGAAA AGGAGAGGTT AGGAAGGGTA ATAGTGGTTT
  TACTGAGAGG TTGTTTTATT CCTGGCTGCT CAGGAACCAC TAGTGCTGGC TTGGTATTCC
  TTCCTCCTCC TCTCTGCCTC ACATGCCTGT CAGAGTCCCA GTATCTGTCT CTTCCAACGG
  GCTTCACACA                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8619028	WI_WGS_1_181766390	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6213360					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180211836 () rs orientation: forward

Symbol	Name	Function Class
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424482	regulatory region 424482	1591 bp distal
Rr424483	regulatory region 424483	172 bp proximal
Rr424484	regulatory region 424484	802 bp proximal
Rr424485	regulatory region 424485	1039 bp proximal
Tssr10461	transcription start site region 10461	1937 bp downstream
Tssr10462	transcription start site region 10462	1908 bp downstream
Tssr10463	transcription start site region 10463	1871 bp downstream