rs6213801 SNP Detail

Summary

• ID
  rs6213801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53424543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCCTCTTCCG AGCTGGGTCG CGACCTTGAG GCCGGGAATC GAGTTTCCAA
  R
  CGTGCGGGGG CCTTCGCCGG CTCTGCTGCC CCCTTTCTCT CCATGGCAGC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8619470	WI_WGS_5_52335132	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6213801					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53424543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	within coordinates
Gm40303	predicted gene, 40303	110 bp upstream
Rr399079	regulatory region 399079	within coordinates
Rr611581	regulatory region 611581	53 bp distal
Rr611582	regulatory region 611582	114 bp proximal
Rr611583	regulatory region 611583	812 bp proximal
Smim20	small integral membrane protein 20	within coordinates
Tssr46209	transcription start site region 46209	74 bp downstream
Tssr46210	transcription start site region 46210	12 bp downstream