rs6213930 SNP Detail

Summary

• ID
  rs6213930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55376626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTCAGTA ACATCGAGTT
  TGGTTTTCTC ACAAGGACAC CAAGTCTCAG ACTATATTGC TGTTAAAACA GTCCTCTTGC
  TCACAGCAGC CTCAGTCATT TGAATTACTT CTGCAGTGGG TTGAGCCTAT TAACTATAGC
  TTTCCTGGAT AGTCTTTATG GCGGACAGCT GTTCTGTTGA GTGTTTGGAG GTGTTGATCC
  Y
  GAGACTTGTG AACAGGGGTT TGAACAACTG TCATGCTGGA GTGACAATTT AGCTCAGCAA
  AAGTGATAAT GGCACATAAG CTGAGGAAAG AGAGCACGCC AATAGCCTCT GATATTTTTG
  TTTTTTGTTT TTTTTTTCTT TTCCAAAAGT ATATGTATAT ATGTGTATAC TAAATGAGTG
  TAATTAGTTA TAGTATTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8619600	WI_WGS_19_55402622	WI	MOUSE	f	SNP							T		C
ss51220887	NES14295783	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6213930					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51220887	NES14295783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55376626 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	459 bp distal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates