rs6214403 SNP Detail

Summary

• ID
  rs6214403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55376723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAATTA CTTCTGCAGT
  GGGTTGAGCC TATTAACTAT AGCTTTCCTG GATAGTCTTT ATGGCGGACA GCTGTTCTGT
  TGAGTGTTTG GAGGTGTTGA TCCTGAGACT TGTGAACAGG GGTTTGAACA ACTGTCATGC
  TGGAGTGACA ATTTAGCTCA GCAAAAGTGA TAATGGCACA TAAGCTGAGG AAAGAGAGCA
  Y
  GCCAATAGCC TCTGATATTT TTGTTTTTTG TTTTTTTTTT CTTTTCCAAA AGTATATGTA
  TATATGTGTA TACTAAATGA GTGTAATTAG TTATAGTATT GATTACTCTC TGAATGAGTG
  AAGGCATAAA CATTACTGTC CCTGGGAGGT CTGTGTGTCT CTTCTGTGTA TTTAGAGATC
  CTCACCCTTT GCTGATGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8620074	WI_WGS_19_55402719	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6214403					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55376723 () rs orientation: forward

Symbol	Name	Function Class
D19Mit35	DNA segment, Chr 19, Massachusetts Institute of Technology 35	556 bp distal
Vti1a	vesicle transport through interaction with t-SNAREs 1A	within coordinates