rs6214460 SNP Detail

Summary

• ID
  rs6214460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4526135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT CTAGGACCCA TCCCCCACCC
  Y
  CACCCCTACC CCCCAAATAG TACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8620131	WI_WGS_7_3879019	WI	MOUSE	f	SNP				T	C
ss46071077	mCV22879957	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148179433	ENSMUSSNP7003535	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss322094964	CHEV_7_4474738	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6214460					SNP	T	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4526135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	1216 bp distal
Dnaaf3	dynein, axonemal assembly factor 3	within coordinates
Rr641975	regulatory region 641975	1686 bp distal
Rr641976	regulatory region 641976	118 bp distal
Rr641977	regulatory region 641977	1264 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64336	transcription start site region 64336	1460 bp downstream
Tssr64337	transcription start site region 64337	1291 bp downstream
Tssr70484	transcription start site region 70484	1233 bp upstream
Tssr70485	transcription start site region 70485	687 bp upstream
Tssr70486	transcription start site region 70486	324 bp upstream
Tssr70487	transcription start site region 70487	307 bp upstream
Tssr70488	transcription start site region 70488	1201 bp downstream