rs6215322 SNP Detail

Summary

• ID
  rs6215322
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53424856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCCCAT CTACTTCCGG
  CCCCTTATGC GGCTGGAGGA ATACCGTGAG TGACCTCTGA CCCCGCGCAG TGGCTGCTCC
  CAGCGCTACC CCGAAGCCCT TAAGCCCCTA CCCTATCTGT TCAAGGAGTG CTGAGGAAGG
  ATGTGGACTT GGGAGTGAGG CTACCCGGGT TCCAGGCTCG CCCAGTGCAG CCCGGTGACC
  W
  CGGACAAGGG GCCCCACCTC TGACCTTCAA TGTTGAGGCT CTACATATCT TTTGCAGGAT
  CAGCAACAAA ACTGTGAGCA TCTTAGGGGT CACAGAGGTG ATGTGTATGA AAGCAGCCTA
  CACACAGCAG GTCAACACTA ACACTAGTTC ACACACAGTA TATACTGATA TACTGAAGAT
  TTAATGTTTT GGGTTAAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8620994	WI_WGS_5_52335445	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6215322					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53424856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	within coordinates
Gm40303	predicted gene, 40303	423 bp upstream
Rr399079	regulatory region 399079	283 bp downstream
Smim20	small integral membrane protein 20	within coordinates
Tssr46209	transcription start site region 46209	387 bp downstream
Tssr46210	transcription start site region 46210	325 bp downstream