rs6215594 SNP Detail

Summary

• ID
  rs6215594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGACAGA TGCCAGCTAT
  TTGAGATAGA ATTGGTTGGA TCCAGGGGCA GCCTGTGGGT GCAGTCTTTA CCCTCACGGA
  ACTCCAAGCA CTGCATAAAA TTCTTCTACT TAGGATCTCG TGTGGCCCTG AATGGCTTTG
  AACATGCACT GCAGCTGACG ATGCCTTGAA CTTCTCATCC TCCTGCCTCT GTCTTCCAGA
  Y
  GCCGGGCTGC AGCTTAAAGG TCCTAGTGAG GTCTCAACAT TCTCAATGGC TTCTCAGCAA
  AAGGCCCCAA GCTCCCATGG TGCATCAGGC TCTGCCTTCA GCGGTGCTCT TCATTCAGCC
  CAGCTGCCTC TTCGGTTTTT GAGAATAAAC CTGGGGAAGT TAATACGCAG TACTGGATCG
  GCTGGAGAGT CTGGATGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8621270	WI_WGS_2_174083699	WI	MOUSE	f	SNP		T	C
ss148324288	ENSMUSSNP7013846	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss320620553	CHEV_2_172680402	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6215594					SNP	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696694 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	545 bp distal
Rr571756	regulatory region 571756	347 bp distal
Rr571757	regulatory region 571757	1352 bp proximal