rs6216224 SNP Detail

Summary

• ID
  rs6216224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87473527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGTGGG ATTGTGTGGA
  GGTCAGAGGA CGAGTTGCGA GTGCTGGGGG TGGAGCGCAA GTGGCCAGCC TTGGTGGCAG
  GGCCTCTGCT GAGCCATCTC GCAGAGTCCC CGTTAGTCTT TCCATGGATG CCTCTGTCTG
  ACTAGGTTAA CCGAATGTAA GGCGTTTACA AATCCTGAGC AGATTTTCAG GGAAGAACTG
  Y
  AGAAATGCAA TGCTGTGAGA AAAGTACTTT TTCTATGGGG TTTCAAGAAA GGAAGAAAAG
  TCTCCTCTCA GCCTTCCATC AGCACAAACT CCGCCCTCTT CCAGAACTCA AATTTGTTCT
  CAATGAATGT TCAGCTTTCC TCAATGTATT TGTAATCTGT GCTTGTGTTG ATATTTCTAT
  TCTCGATCTA GTATCTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8621900	WI_WGS_8_86462907	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6216224					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87473527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	117 bp distal
Gm10638	predicted gene 10638	within coordinates
Gm63869	predicted gene, 63869	1480 bp upstream
Rr666882	regulatory region 666882	1491 bp distal
Rr666883	regulatory region 666883	1436 bp distal
Rr666884	regulatory region 666884	976 bp distal
Rr666885	regulatory region 666885	475 bp distal
Siah1a	siah E3 ubiquitin protein ligase 1A	965 bp upstream
Tssr78572	transcription start site region 78572	1427 bp downstream
Tssr78573	transcription start site region 78573	1384 bp downstream
Tssr78574	transcription start site region 78574	1345 bp downstream
Tssr78575	transcription start site region 78575	1298 bp downstream
Tssr78576	transcription start site region 78576	1267 bp downstream
Tssr78577	transcription start site region 78577	1239 bp downstream
Tssr78578	transcription start site region 78578	1215 bp downstream
Tssr82293	transcription start site region 82293	845 bp upstream
Tssr82294	transcription start site region 82294	776 bp upstream