rs6216602 SNP Detail

Summary

• ID
  rs6216602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCGTGTG GCCCTGAATG
  GCTTTGAACA TGCACTGCAG CTGACGATGC CTTGAACTTC TCATCCTCCT GCCTCTGTCT
  TCCAGATGCC GGGCTGCAGC TTAAAGGTCC TAGTGAGGTC TCAACATTCT CAATGGCTTC
  TCAGCAAAAG GCCCCAAGCT CCCATGGTGC ATCAGGCTCT GCCTTCAGCG GTGCTCTTCA
  Y
  TCAGCCCAGC TGCCTCTTCG GTTTTTGAGA ATAAACCTGG GGAAGTTAAT ACGCAGTACT
  GGATCGGCTG GAGAGTCTGG ATGCGTGAGA GTCAGGGCTC ACTGAGCACA CTGCTCTTCC
  ACACTTCCTC CCCCAAGAAT TTTTGTTCTG TTTATTTGTG ACAAGGTCTC ACGTAGCCCA
  GGCTGGACTG AAACTCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8622278	WI_WGS_2_174083813	WI	MOUSE	f	SNP								T	C
ss37826188	NES08710664	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	T			T	T	T		T	T	C	C		C
ss148324313	ENSMUSSNP3872157	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320620558	CHEV_2_172680516	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6216602					SNP	C	C	C	C	T	T	T	T	C	T	T	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37826188	NES08710664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696808 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	659 bp distal
Rr571756	regulatory region 571756	461 bp distal
Rr571757	regulatory region 571757	1238 bp proximal