rs6216778 SNP Detail

Summary

• ID
  rs6216778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGTGC ATACTAGTAA
  TCTAAGCCCT AGGGAAGGAG AGGCTGGAGG AGCAGGAGTT CAAAGCCAGC ATGAGCTACA
  CAAGACCCTG TATCAAGACC ACCACCACCA TAACAACAAA CAGCAAAATT CCTTCCCCAA
  AATAACTCCC AAGGTAGCTG AGTGGTGTTG CCTGCGATCC CAGCCCTGGG AGGCAGAAGC
  R
  GGAGGATTTG GGCCACACCA GCCAGCCATG CAGAAGCATG GACACTGCGG GGGAAGTTGT
  CCAGAGATGC CTGGACACCA GAACACTTAA CTCACCCAGG CAACTCTGGG GTCTTCGCTG
  AAGCCATGGG GACTCTCATG CTGGCATGGG AGTTCGTGCC TGCTCCCGGA GGGGCTGCAG
  ACTCCAGCCC TGATCATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8622454	WI_WGS_5_138240655	WI	MOUSE	f	SNP	A	G
ss321704287	CHEV_5_139826922	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6216778					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336723 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1649 bp upstream
Rr623253	regulatory region 623253	842 bp distal
Rr623254	regulatory region 623254	186 bp proximal
Rr623255	regulatory region 623255	440 bp proximal
Rr623256	regulatory region 623256	1159 bp proximal
Tssr49499	transcription start site region 49499	1639 bp upstream