rs6216779 SNP Detail

Summary

• ID
  rs6216779
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTGCAT ACTAGTAATC
  TAAGCCCTAG GGAAGGAGAG GCTGGAGGAG CAGGAGTTCA AAGCCAGCAT GAGCTACACA
  AGACCCTGTA TCAAGACCAC CACCACCATA ACAACAAACA GCAAAATTCC TTCCCCAAAA
  TAACTCCCAA GGTAGCTGAG TGGTGTTGCC TGCGATCCCA GCCCTGGGAG GCAGAAGCAG
  S
  AGGATTTGGG CCACACCAGC CAGCCATGCA GAAGCATGGA CACTGCGGGG GAAGTTGTCC
  AGAGATGCCT GGACACCAGA ACACTTAACT CACCCAGGCA ACTCTGGGGT CTTCGCTGAA
  GCCATGGGGA CTCTCATGCT GGCATGGGAG TTCGTGCCTG CTCCCGGAGG GGCTGCAGAC
  TCCAGCCCTG ATCATCCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8622455	WI_WGS_5_138240657	WI	MOUSE	f	SNP	G	C
ss321704288	CHEV_5_139826924	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6216779					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336725 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1647 bp upstream
Rr623253	regulatory region 623253	844 bp distal
Rr623254	regulatory region 623254	184 bp proximal
Rr623255	regulatory region 623255	438 bp proximal
Rr623256	regulatory region 623256	1157 bp proximal
Tssr49499	transcription start site region 49499	1637 bp upstream