rs6217182 SNP Detail

Summary

• ID
  rs6217182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193905508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGAAGAAAAT
  GTCAATGTAC CAATAAGCAA GAAAGGGTGG TGTCCCTCGT TTTTATGTGT ATTTCAGAGT
  ACTTCTGATC CTTGAATAGG GCTTCTGTCG CCGTGGAGAT GGGACTCCAG GTTTCTTCCA
  CATTAACTAC ATGCCCTTTG AGAAGCTTCC TCTGTAAGAA TCCAGATGTT CTGTGGCAGC
  AGAAGTTTTT CAAGGGACGT GCCATCTAGC GGCCGCCATT GTGAAGTGCA GCCTGCCGCT
  Y
  AGCTGGCCCG TTGCTAAGGG CAGCAGCTGC AGCAGTTCAT CTCCCTGTCT GAGGCAGAGA
  ATCATGGGAT GTTTACACTG AGAGCGACCT CCAGAGATTT CCTGTCAAGA CATCTGCCTC
  CAACCAGCAC GAACAATATG TCTTATGCTT ATAGTGTTGT AAAAAAACAG TTACAAATAG
  TACCACATTT TAATTCTCAC ACCAGCCCCA TGAAAGTTGA TGTAATCATT ATTTCCGTTT
  TAAAGATGAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8622858	WI_WGS_1_195755289	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6217182					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193905508 () rs orientation: forward

Symbol	Name	Function Class
4930503O07Rik	RIKEN cDNA 4930503O07 gene	441 bp upstream
Rr426624	regulatory region 426624	79 bp distal
Rr426625	regulatory region 426625	within coordinates
Rr426626	regulatory region 426626	24 bp distal
Rr426627	regulatory region 426627	81 bp proximal
Rr426628	regulatory region 426628	579 bp proximal