rs6217381 SNP Detail

Summary

• ID
  rs6217381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40081212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT CAATTTCTGG CAATCCCAGA
  R
  CAAATGTTTG ACTTGGTAAT ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8623057	WI_WGS_8_38751245	WI	MOUSE	f	SNP								G		A
ss46269997	mCV25306821	ABI	CRAMUS_MOUSE	f	SNP		A	A					G			A
ss47476738	NES11459208	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G		A	A	A		G	A	A	G		A
ss144620629	ENSMUSSNP4108752	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A								A
ss322624614	CHEV_8_40713525	CHEVERUD	SCREENING_POP	f	SNP														A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6217381					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476738	NES11459208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40081212 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	1074 bp downstream
Tssr81027	transcription start site region 81027	1177 bp downstream
Tssr81028	transcription start site region 81028	1227 bp downstream
Tssr81029	transcription start site region 81029	1346 bp downstream
Tssr81030	transcription start site region 81030	1468 bp downstream