rs6217776 SNP Detail

Summary

• ID
  rs6217776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGTGGT GTTGCCTGCG
  ATCCCAGCCC TGGGAGGCAG AAGCAGGAGG ATTTGGGCCA CACCAGCCAG CCATGCAGAA
  GCATGGACAC TGCGGGGGAA GTTGTCCAGA GATGCCTGGA CACCAGAACA CTTAACTCAC
  CCAGGCAACT CTGGGGTCTT CGCTGAAGCC ATGGGGACTC TCATGCTGGC ATGGGAGTTC
  R
  TGCCTGCTCC CGGAGGGGCT GCAGACTCCA GCCCTGATCA TCCTGACAGT CTCCTGTCCC
  ACCCTGCCTG GCTTTTCTAC ACCTACCTCC ACATCCCATT CATTGTCCCT GATGGCCAGG
  CAAATCTCAG CTCACCAGCT ACCGTGCAGA CACCACAGCA CACCATCTGC CTTGACTTCC
  TCCTTTCCAA TACAAGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8623452	WI_WGS_5_138240811	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6217776					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336879 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1493 bp upstream
Rr623253	regulatory region 623253	998 bp distal
Rr623254	regulatory region 623254	30 bp proximal
Rr623255	regulatory region 623255	284 bp proximal
Rr623256	regulatory region 623256	1003 bp proximal
Tssr49499	transcription start site region 49499	1483 bp upstream