rs6217897 SNP Detail

Summary

• ID
  rs6217897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCAGCC ATGCAGAAGC
  ATGGACACTG CGGGGGAAGT TGTCCAGAGA TGCCTGGACA CCAGAACACT TAACTCACCC
  AGGCAACTCT GGGGTCTTCG CTGAAGCCAT GGGGACTCTC ATGCTGGCAT GGGAGTTCGT
  GCCTGCTCCC GGAGGGGCTG CAGACTCCAG CCCTGATCAT CCTGACAGTC TCCTGTCCCA
  S
  CCTGCCTGGC TTTTCTACAC CTACCTCCAC ATCCCATTCA TTGTCCCTGA TGGCCAGGCA
  AATCTCAGCT CACCAGCTAC CGTGCAGACA CCACAGCACA CCATCTGCCT TGACTTCCTC
  CTTTCCAATA CAAGCAAACG GAGCCACACC AATCCTCCCC TGGGATTGTG ACATCAGAGT
  CCTGTTGGTC CCTCTGCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8623573	WI_WGS_5_138240873	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6217897					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336941 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1431 bp upstream
Tssr49499	transcription start site region 49499	1421 bp upstream